~ salmonella-environment-setup (master) 4868b1773115a8711d3fdf912f3bff53425b529d

commit 4868b1773115a8711d3fdf912f3bff53425b529d
Author:     Mario Domenech Goulart <mario.goulart@gmail.com>
AuthorDate: Wed Mar 6 21:21:37 2013 -0300
Commit:     Mario Domenech Goulart <mario.goulart@gmail.com>
CommitDate: Wed Mar 6 21:21:37 2013 -0300

    Importing

diff --git a/README b/README
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--- /dev/null
+++ b/README
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+Scripts to set up an environment to run Salmonella on all CHICKEN eggs
\ No newline at end of file
diff --git a/debian-wheezy.sh b/debian-wheezy.sh
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+++ b/debian-wheezy.sh
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+#! /bin/sh
+
+## This is more a guide than a serious shell script.  You can actually
+## run it as an script, but don't expect any graceful error handling.
+
+## Disable Install-Suggests and Install-Recommends to save some space
+echo 'APT::Install-Suggests "0";' > /etc/apt/apt.conf.d/20no-extra-packages
+echo 'APT::Install-Recommends "0";' >> /etc/apt/apt.conf.d/20no-extra-packages
+sudo apt-get update
+
+
+## Packages
+sudo apt-get install \
+    build-essential \
+    git-core \
+    cmake \
+    flex \
+    subversion \
+    automake \
+    libf2c2-dev \
+    libalut-dev \
+    libploticus0-dev \
+    libtool \
+    libgsl0-dev \
+    r-base-core \
+    libfcgi-dev \
+    libgd2-xpm-dev \
+    libimlib2-dev \
+    libg2-dev \
+    libexif-dev \
+    libfann-dev \
+    libgts-dev \
+    libglpk-dev \
+    libaugeas-dev \
+    libtokyocabinet-dev \
+    libossp-uuid-dev \
+    libatlas-base-dev \
+    libsundials-serial-dev \
+    liblapack-dev \
+    libsdl-net1.2-dev \
+    libffi-dev \
+    libsoil-dev \
+    gfortran \
+    libplot-dev \
+    libqt4-opengl-dev \
+    libxosd-dev \
+    libreadline6-dev \
+    libncurses5-dev \
+    libssl-dev \
+    libopenmpi-dev \
+    libatlas-dev \
+    libmysqlclient-dev \
+    libopenal-dev \
+    python-dev \
+    libsqlite3-dev \
+    libgdbm-dev \
+    freetds-dev \
+    libqt4-dev \
+    libstemmer-dev \
+    zlib1g-dev \
+    libsvn-dev \
+    liballegro4.2-dev \
+    libfltk1.3-dev \
+    libzmq-dev \
+    libmpfi-dev \
+    libphysfs-dev \
+    tk8.5 \
+    freeglut3-dev \
+    libglfw-dev \
+    libsdl1.2-dev \
+    libsdl-mixer1.2-dev \
+    libsdl-sound1.2-dev \
+    libsdl-ttf2.0-dev \
+    libsdl-gfx1.2-dev \
+    libsdl-image1.2-dev \
+    libwebkitgtk-3.0-dev
+
+
+##
+## Things that are not packaged for Debian
+##
+
+## discount
+
+wget http://www.pell.portland.or.us/~orc/Code/discount/discount-2.1.5a.tar.bz2
+tar xjvf discount-2.1.5a.tar.bz2
+cd discount-2.1.5a
+sed -e 's/CFLAGS=-g/CFLAGS=-g -fPIC/' Makefile
+./configure.sh --prefix=/usr/local
+make
+sudo make install
+
+
+### epeg
+
+wget http://www.call-with-current-continuation.org/tarballs/epeg-cvs-20070219.tar.gz
+tar xzvf epeg-cvs-20070219.tar.gz
+cd epeg
+./autogen.sh
+./configure --prefix=/usr/local
+sudo make install
+
+
+### proccpuinfo
+
+wget http://download.savannah.gnu.org/releases/proccpuinfo/libproccpuinfo-0.0.8.tar.bz2
+tar xjvf libproccpuinfo-0.0.8.tar.bz2
+cd libproccpuinfo-0.0.8/
+cmake -D CMAKE_INSTALL_PREFIX=/usr/local .
+make
+make test
+sudo make install
+
+
+### bvspis
+
+mkdir /usr/local/bvspis
+chown user:user /usr/local/bvspis
+cd /usr/local/bvspis
+wget http://www.netlib.org/toms/770
+awk 'NR>4' 770 > bvspis.sh
+rm 770
+sh ./bvspis.sh
+rm ./bvspis.sh
+
+# use BVSPIS_PATH=/usr/local/bvspis/ salmonella bvsp-spline